CD „Bernard Rose: Music for choir and organ“, Toccata Classics (2016). Estonian Philharmonic Chamber Choir, Ene Salumäe (organ), conductor Gregory Rose
CD „Hugo Lepnurm. Chorale Preludes“, Hugo Lepnurm Music Society (2014). Virve Soode, Ene Salumäe, Kristel Aer (organ)
CD „Soul to Soul“, Estonian National Opera (2013). Estonian National Opera Boys’ Choir, Ene Salumäe (organ), conductor Hirvo Surva
CD „Vivit!“, Ondine (2013); Estonian Philharmonic Chamber Choir, conductor Daniel Reuss, Ene Salumäe (organ), Siim Selis (piano)
2 CD-d „Orelimuusika“, Talmar & Põhi (2011); Ene Salumäe (organ, CD1), Piret Aidulo (organ, CD2)
CD „Frank Martin. Golgotha“, Harmonia Mundi (2010). Cappella Amsterdam, Estonian Philharmonic Chamber Choir, Estonian National Symphony Orchestra, conductor Daniel Reuss
CD „Requiem c-moll“, Salk (2005); Tallinn Chamber Orchestra, Nargen Festival Choir, Mati Turi (tenor), Ene Salumäe (organ), conducted Tõnu Kaljuste
CD „Cyrillus Kreek. Rquiem / Tõnu Kõrvits. „Kreegi vihik““, Estonian Philharmonic Chamber Choir (2008). Estonian Philharmonic Chamber Choir, Tallinn Chamber Orchestra, condctor Tõnu Kaljuste
CD „Anrtonio Vivaldi. Salmi a due cori“, Carus-verlag (2002). Estonian Philharmonic Chamber Choir, Tallinn Chamber Orchestra, condctor Tõnu Kaljuste
CD „Wolfgang Amadeus Mozart. Vesperae et Litania“, Carus-verlag (2000). Estonian Philharmonic Chamber Choir, Tallinn Chamber Orchestra, condctor Tõnu Kaljuste
CD „Wolfgang Amadeus Mozart. Litaniae“, Carus-verlag (2000). Estonian Philharmonic Chamber Choir, Tallinn Chamber Orchestra, condctor Tõnu Kaljuste
CD „Helisev Toomkirik“, SaluMuusik (1997). Ene Salumäe (organ), Kadri Ploompuu (organ), choirs of Dome Church congregation, conductor Anne-Mai Salumäe
CD „Beatus“, Virgin Classics (1997). Estonian Philharmonic Chamber Choir, condctor Tõnu Kaljuste
CD „Helgeim aeg“, Hereditas (1996). Jaan Arder (vocal), Ene Salumäe (organ) et
MC „Missa Nova“ (1993). Chamber Choir, Ene Salumäe (conductor, composer, piano)